Our DNA Barcoding publications include:
Twyford AD, Beasley J, Barnes I, Allen H, Azzopardi F, Bell D, Blaxter ML, Broad G, Campos-Dominguez L, Choonea D, Crowley L, Cuber P, Cunliffe M, Dombrowski A, Douglas B, Forrest LL, Gaya E, Greeves C, Griffin C, Harley J, Hart ML, Holland PWH, Hollingsworth PM, Januszczak I, Jones A, Kersey P, Kilias E, Lawniczak MKN, Lewis OT, Mian S, Minotto A, Misra R, Mulhair PO, Pereira da Conceicoa L, Price BW, Salatino S, Shaw F, Sivell O, Sivess L, Uhl R, Woof K; Darwin Tree of Life Consortium. (2024). A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project. Wellcome Open Research doi: 10.12688/wellcomeopenres.21143.1.
Brown MR, Hollingsworth PM, Forrest LL, Hart ML, Leitch IJ, Jones L, Ford C, de Vere N, Twyford AD. (2023). Genetic factors predict hybrid formation in the British flora. Proceedings of the National Academy of Sciences 120, e2220261120.
Neaves LE, Ogden R, Hollingsworth PM (2022) Genomics and Conservation Translocations. In: M Gaywood, J Ewen, PM Hollingsworth, A Moehrenschlager (eds.) Conservation Translocations. Cambridge: Cambridge University Press, pp 271-302.
Liu Z-F, MA H, Zhang X-Y, Ci X-Q, Li L, Hu J-L, Zhang C-Y, Xiao J-H, Li H-W, Conran JG, Twyford AD, Hollingsworth PM, Li J (2022). Do taxon-specific DNA barcodes improve species discrimination relative to universal barcodes in Lauraceae? Botanical Journal of the Linnean Society 199, 741-753, https://doi.org/10.1093/botlinnean/boab089.
Henniges M, Powell R, Mian S, Stace CA, Walker K, Gornall RJ, Christenhusz M, Brown M, Twyford A, Hollingsworth PM, Jones L, De Vere N, Antonelli A, Leitch A, Leitch I (2022). A taxonomic, genetic and ecological data resource for the vascular plants of Britain and Ireland. Scientific Data. 9, 1, https://doi.org/10.1038/s41597-021-01104-5
Manzanilla V, Teixidor-Toneu I, Martin GJ, Hollingsworth PM, de Boer HJ, Kool A (2022) Tracking the global supply chain of herbal medicines with novel genomic DNA barcodes. Molecular Ecology Resources, 22, 212-224. https://doi.org/10.1111/1755-0998.13472
Fu CN, Mo ZQ, Yang JB, Cai J, Ye LJ, Zou JY, Qin HT, Zheng W, Hollingsworth PM, Li DZ, Gao LM (2022). Testing genome skimming for species discrimination in the large and taxonomically difficult genus Rhododendron. Molecular Ecology Resources, 22, 404-414. https://doi.org/10.1111/1755-0998.13479
Grant DM, Brodnicke OB, Evankow AM, Ferreira AO, Fontes JT, Hansen AK, Jensen MR, Kalayci TE, Leeper A, Patil SK, Prati S, Reunamo A, Roberts AJ, Shigdel R, Tyukosova A, Bendiksby M, Blaaid R, Costa FO, Hollingsworth PM, Stur E, Ekrem T (2021). The future of DNA barcoding: reflections from early career researchers. Diversity, 13, 313. https://doi.org/10.3390/d13070313
Steele MP, Neaves LE, Klump BC, St Clair JJH, Fernandes JRSM, Hequet V, Shaw P, Hollingsworth PM, Rutz, C (2021) DNA barcoding identifies cryptic animal tool material. Proceedings of the National Academy of Science, USA, 118 (29) e2020699118, https://doi.org/10.1073/pnas.2020699118.
Jones L, Twyford AD, Ford CR, Rich TCG, Davies H, Forrest LL, Hart ML, McHaffie H, Brown MR, Hollingsworth PM, de Vere N. (2021). Barcode UK: A complete DNA barcoding resource for the flowering plants and conifers of the United Kingdom. Molecular Ecology Resources, 21, 2050-2062 https://doi.org/10.1111/1755-0998.13388.
Liu ZF, Ma M, Ci XQ, Li L, Song Y, Liu B, Li HW, Wang SL, Qu XJ, Hu JL, Zhang XY, Conran JG, Twyford AD, Yang JB, Hollingsworth PM, Li J (2021). Can plastid genome sequencing be used for species identification in the Lauraceae? Botanical Journal of the Linnean Society, 197, 1-14https://doi.org/10.1093/botlinnean/boab018.
Alsos IG, Lavergne S, Merkel MKF, Boleda M, Lammers Y, Alberti A, Pouchon C, Denoeud F, Pitelkova I, Pușcaș M, Roquet C, Hurdu B-I, Thuiller W, Zimmermann NE, Hollingsworth PM, Coissac E. (2020) The treasure vault can be opened: Large-scale genome skimming works well using herbarium and silica gel dried material. Plants, 9, 432.
Zeng, CX, Hollingsworth PM, Yang J, He ZS, Zhang ZR, Li DZ, Yang JB (2018). Genome skimming herbarium specimens for DNA barcoding and phylogenomics. Plant Methods 12, 43
Tan SL, Luo YH, Hollingsworth PM, Burgess KS, Xu K, Li DZ, Gao LM (2018). DNA barcoding herbaceous and woody plant species at a subalpine forest dynamics plot in Southwest China. Ecology and Evolution
Wang X, Gussarova G, Ruhsam M, de Vere N, Metherell C, Hollingsworth PM, Twyford AD (2018) DNA barcoding British Euphrasia reveals deeply divergent polyploids but lack of species-level resolution. AoB Plants 10, 6053
Ruhsam M, Hollingsworth PM (2018) Authentication of Eleutherococcus and Rhodiola herbal supplement products in the United Kingdom. Journal of Pharmaceutical and Biomedical Analysis, 149, 403-409
Hollingsworth PM, Neaves L, Twyford AD (2017). Using DNA sequence data to enhance understanding of plant diversity at the species level. In S Blackmore,S Oldfield (eds). Plant Conservation Science & Practice - The Role of Botanic Gardens. Cambridge University Press: Cambridge, pp.23-48.
Adamowicz, SJ, Hollingsworth PM, Ratnasingham S, Van der Bank M (2017). International barcode of life: focus on big biodiversity in South Africa. Genome 60, 875-879
Hollingsworth PM, Li D, VanderBank M, Twyford AD (2016). Telling plant species apart with DNA: from barcodes to genomes. Philosophical Transactions of the Royal Society, Series B; 371, 20150338.
Hebert PDN, Hollingsworth PM, Hajibabaei M (2016). From writing to reading the encyclopedia of life. Philosophical Transactions of the Royal Society, Series B, 371, 20150321
Hebert PDN, Hajibabaei M, HOLLINGSWORTH PM (eds) (2016). DNA barcoding: from species to biomes. Philosophical Transactions of the Royal Society of London, Series B, vol 371.
Hofbauer WK, Forrest LL, Hollingsworth PM, Hart ML (2016). Mosses involved in the primary colonisation of modern building surfaces – genetic aspects. Bryophyte Diversity and Evolution, 38, 1-22.
Coissac, E, Hollingsworth PM, Lavergne, S, Taberlet, P (2016). From barcodes to genomes: extending the concept of DNA barcoding. Molecular Ecology, 25, 1423-1428.
Ruhsam M, Clark A, Finger A, Wulff AS, Mill RR, Thomas PI, Gardner MF, Gaudeul M, Ennos RA, Hollingsworth PM. (2016). Hidden in plain view: cryptic diversity in the emblematic Araucaria of New Caledonia. American Journal of Botany, 103, 888-898.
Ruhsam M, Rai HS, Mathews S, Ross TG, Graham SW, Raubeson LA, Mei W, Thomas PI, Gardner MF, Ennos RA, Hollingsworth PM (2015). Does complete plastid genome sequencing improve species discrimination and phylogenetic resolution in Araucaria? Molecular Ecology Resources, 15, 1067-1078.
Schoch CL, Seifert KA, and Fungal Barcoding Consortium (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, 109, 6241-6246. www.pnas.org/cgi/doi/10.1073/pnas.1117018109.
Fazekas AJ, Kuzmina M, Newmaster Steven G, Hollingsworth PM (2012) DNA barcoding methods for land plants. Methods in Molecular Biology, 858: 223-252.
Bell D, Long DG, Forrest AD, Hollingsworth ML, Blom HH, Hollingsworth PM (2012) DNA barcoding European Herbertus (Marchantiopsida, Herbertaceae) and the discovery and description of a new species. Molecular Ecology Resources, 12, 36-47.
Hollingsworth PM (2011) Refining the DNA barcode for land plants. Proceedings of the National Academy of Sciences, 108, 19451-19452.
Hollingsworth PM, Graham SW, Little DP (2011) Choosing and using a plant DNA barcode. PLoSONE, 6(5): e19254.
Kelly L, Hollingsworth PM, Coppins B, Ellis C, Harrold P, Tosh J, Yahr R (2011) DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context. New Phytologist, 191, 288-300.
Fazekas AJ, Steeves R, Newmaster SG, Hollingsworth PM (2010). Stopping the stutter: Improvements in sequence quality from regions with mononucleotide repeats can increase the usefulness of non-coding regions for DNA barcoding. Taxon, 59, 694-697.
CBOL Plant Working Group - Hollingsworth PM, Forrest L, Spouge J, Hajibabaei M, Ratnasingham S, van-der-Bank M, Chase M, Cowan R, Erickson D, Fazekas A, Graham S, James K, Kim KJ, Kress W, Schneider H, van-Alphen-Stahl J, Barrett S, van-den-Berg C, Bogarin D, Burgess K, Cameron K, Carine M, Chacón J, Clark A, Conrad F, Devey D, Clarkson J, Ford C, Hedderson T, Hollingsworth M, Husband B, Kelly L, Kesanakurti P, Kim J, Kim Y, Lahaye R, Lee HL, Long D, Madriñán S, Maurin O, Meusnier I, Newmaster S, Park CW, Percy D, Petersen G, Richardson J, Salazar G, Savolainen V, Seberg O, Wilkinson M, Yi DK, Little D (2009) A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the USA, 106, 12794-12797. [Commentary articles on this paper: PNAS (106, 12569-12570), Nature (doi:10.1038/news.2009.733) and Science (325, 526)].
Hollingsworth ML, Clark A, Forrest LL, Richardson JE, Pennington RT, Long D, Cowan R, Chase MW, Gaudeul M, Hollingsworth PM (2009) Selecting barcoding loci for plants: evaluation of seven candidate loci with species level sampling in three divergent groups of land plants Molecular Ecology Resources,9, 439-457.
Ford CS, Ayres KL, Haider N, Toomey N, van-Alpen-Stohl J, Kelly L, Wilstrom N, Hollingsworth PM et al. (2009) Selection of candidate DNA barcoding regions for use on land plants. Botanical Journal of the Linnean Society, 159, 1-11.
Hollingsworth PM (2008) DNA barcoding plants in biodiversity hotspots: progress and outstanding questions. Heredity, 101, 1-2. http://www.nature.com/hdy/journal/v101/n1/full/hdy200816a.html
Hollingsworth PM. (2007) DNA barcoding: potential users. Genomics Society and Policy 3, 44-47.
Chase MW, Cowan RS, Hollingsworth PM, van den Berg C, Madrinan S, Petersen G, Seberg O, Jorgsensen T, Cameron KM, Carine M, Pedersen N, Hedderson TAJ, Conrad F, Salazar GA, Richardson JE, Hollingsworth ML, Barraclough TG, Kelly L and Wilkinson M (2007) A proposal for a standard protocol to barcode all land plants. Taxon, 56, 295-299.